2006

• Cui, L., Yue, F., dePamphilis, C., Moret, B.M.E., and Tang, J., "Inferring ancestral chloroplast genomes with inverted repeat," Procedings of the 2006 International Conference on Bioinformatics and Computational Biology (Biocomp'06), pp 75-81, Las Vegas, NV. PS
• Zhang, M. and J. Tang. "Succinct Text Indexes on Large Alphabet". Third Annual Conference on Theory and Applications of Models of Computation (TAMC 2006). Accpeted, to appear.
• Cui, L., J. Leebens-Mack, L. Wang, J. Tang, L. Rymarquis, D. Stern, and C.W. dePamphilis. "Adaptive Evolution of Chloroplast Genome Structure Inferred Using a Parametric Bootstrap Approach." BMC Evolutionary Biology, 6:13, 2006. PDF

2005

• Tang, J. and Wang, L., "Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony," Proc. 5th IEEE Conf. on Bioinformatics and Bioengineering. PS
• Liu, T., Tang, J., and Moret, B.M.E., "Quartet methods for phylogeny reconstruction from gene orders," Proc. 11th Int'l Computing and Combinatorics Conference COCOON'05, Kunming (Yunnan, PR China). PS
• Tang, J., and Moret, B.M.E., "Linear programming for phylogenetic reconstruction based on gene rearrangements," Proc. 16th Symp. on Combinatorial Pattern Matching, CPM'05. PS
• Moret, B.M.E., Tang, J., and Warnow. T., "Reconstructing phylogenies from gene-content and gene-order data," in Mathematics of Evolution and Phylogeny, O. Gascuel, ed., Oxford Univ. Press (2005), 321-352. PS

2004

• Tang, J., Moret, B.M.E., Cui, L., and dePamphilis, C.W., "Phylogenetic reconstruction from arbitrary gene-order data" Proc. 4th IEEE Conf. on Bioinformatics and Bioengineering BIBE'04, 592-599, IEEE Press (2004). PS

2003

• Tang, J., and Moret, B.M.E., "Scaling up accurate phylogenetic reconstruction from gene-order data," Proc. 11th Int'l Conf. on Intelligent Systems for Molecular Biology ISMB'03, in Bioinformatics 19 (Suppl. 1) (2003), i305-i312. PS
• Tang, J., and Moret, B.M.E., "Phylogenetic reconstruction from gene rearrangement data with unequal gene contents," Proc. 8th Workshop on Algorithms and Data Structures WADS'03, in Lecture Notes in Computer Science 2748, 2003, 37-46. PS

2002

• Moret, B.M.E., Siepel, A.C., Tang, J., and Liu, T., "Inversion medians outperform breakpoint medians in phylogeny reconstruction from gene-order data," Proc. 2nd Int'l Workshop on Algorithms in Bioinformatics (WABI'02), Rome (2002), Lecture Notes in Computer Science 2452, 521-536, Springer Verlag. PS
• Moret, B.M.E., Tang, J., Wang, L.S., and Warnow, T., "Steps toward accurate reconstruction of phylogenies from gene-order data'' (invited, special issue on computational biology), J. Comput. Syst. Sci. 65, 3 (2002), 508-525. PS

Thesis

• "Large Scale Phylogenetic Reconstruction from Arbitrary Gene-order Data" Ph.D. Dissertation, 05/2004 PS
• "A Study of Bounding Methods for Reconstructing Phylogenies from Gene-Order Data" Master Thesis, 01/2002 PS

Others (none-reviewed conference and tech report)

• Moret, B.M.E. and Tang, J., "Improved bounding and searching for phylogeny reconstruction from gene-order data," UNM CS techreport TR-CS-2001-30.PS
• "Software Framework for Simulation of Deployable Optical Membrane Telescope Mirrors," Optical Society of America, Baltimore, 1998.HTML
• Tang, J., Desjarlais, L., Gerstle, W., Panthaki, M. and Sahu, R., "Application of CoMeT/SoftLab To Simulation of Multidisciplinary Systems," WAC2000, Hawaii, 06/2000.MS Word DOC