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New List.
2006
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Cui, L., Yue, F., dePamphilis, C., Moret, B.M.E., and Tang, J.,
"Inferring ancestral chloroplast genomes with inverted repeat,"
Procedings of the 2006 International Conference on Bioinformatics and Computational Biology (Biocomp'06), pp 75-81, Las Vegas, NV.
PS
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Zhang, M. and J. Tang. "Succinct Text Indexes on Large Alphabet".
Third Annual Conference on Theory and Applications of Models of Computation
(TAMC 2006). Accpeted, to appear.
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Cui, L., J. Leebens-Mack, L. Wang, J. Tang, L. Rymarquis, D. Stern, and C.W. dePamphilis. "Adaptive Evolution of Chloroplast
Genome Structure Inferred Using a Parametric Bootstrap Approach." BMC
Evolutionary Biology, 6:13, 2006.
PDF
2005
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Tang, J. and Wang, L.,
"Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony,"
Proc. 5th IEEE Conf. on Bioinformatics and Bioengineering.
PS
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Liu, T., Tang, J., and Moret, B.M.E.,
"Quartet methods for phylogeny reconstruction from gene orders,"
Proc. 11th Int'l Computing and Combinatorics Conference
COCOON'05, Kunming (Yunnan, PR China).
PS
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Tang, J., and Moret, B.M.E.,
"Linear programming for phylogenetic reconstruction based on gene
rearrangements,"
Proc. 16th Symp. on Combinatorial Pattern Matching, CPM'05.
PS
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Moret, B.M.E., Tang, J., and Warnow. T.,
"Reconstructing phylogenies from gene-content and gene-order data,"
in Mathematics of Evolution and Phylogeny, O. Gascuel, ed., Oxford Univ. Press (2005), 321-352.
PS
2004
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Tang, J., Moret, B.M.E., Cui, L., and dePamphilis, C.W.,
"Phylogenetic reconstruction from arbitrary gene-order data"
Proc. 4th IEEE Conf. on Bioinformatics and Bioengineering
BIBE'04,
592-599, IEEE Press (2004).
PS
2003
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Tang, J., and Moret, B.M.E.,
"Scaling up accurate phylogenetic reconstruction from gene-order data,"
Proc. 11th Int'l Conf. on Intelligent Systems for Molecular Biology
ISMB'03,
in Bioinformatics
19 (Suppl. 1) (2003), i305-i312.
PS
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Tang, J., and Moret, B.M.E.,
"Phylogenetic reconstruction from gene rearrangement data with unequal
gene
contents," Proc. 8th Workshop on Algorithms and Data Structures
WADS'03, in
Lecture
Notes in Computer
Science 2748, 2003, 37-46.
PS
2002
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Moret, B.M.E., Siepel, A.C., Tang, J., and Liu, T.,
"Inversion medians outperform breakpoint medians in phylogeny
reconstruction
from gene-order data,"
Proc. 2nd Int'l Workshop on Algorithms in Bioinformatics
(WABI'02),
Rome (2002),
Lecture Notes in
Computer
Science 2452, 521-536, Springer Verlag.
PS
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Moret, B.M.E., Tang, J., Wang, L.S., and Warnow, T.,
"Steps toward accurate reconstruction of phylogenies from gene-order
data''
(invited, special issue on computational biology),
J. Comput.
Syst. Sci. 65, 3 (2002), 508-525.
PS
Thesis
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"Large Scale Phylogenetic Reconstruction from Arbitrary Gene-order Data"
Ph.D. Dissertation, 05/2004 PS
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"A Study of Bounding Methods for Reconstructing
Phylogenies from Gene-Order Data"
Master Thesis, 01/2002 PS
Others (none-reviewed conference and tech report)
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Moret, B.M.E. and Tang, J.,
"Improved bounding and searching for phylogeny reconstruction from
gene-order data,"
UNM CS techreport TR-CS-2001-30.PS
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"Software Framework for Simulation of Deployable Optical Membrane Telescope
Mirrors," Optical Society of America, Baltimore, 1998.HTML
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Tang, J., Desjarlais, L., Gerstle, W., Panthaki, M. and Sahu, R.,
"Application of CoMeT/SoftLab To Simulation of Multidisciplinary Systems,"
WAC2000, Hawaii, 06/2000.MS Word DOC