Peer Reviewed Publications:

1. Yue, F., Shi, J. and Tang, J., "Simultaneous Phylogeny Reconstruction and Multiple Sequence Alignment," Proc. 7th Asia-Pacific Bioinformatics Conf. (APBC 2009), accepted.
2. Yue, F., Zhang, M. and Tang, J., "Phylogenetic Reconstruction from Transposition", BMC Genomics, accepted.
3. Yue, F., Cui, L., dePamphilis, C. Moret, B., and Tang, J., "Gene rearrangement analysis from chloroplast genomes with inverted repeat", BMC Genomics, 2008, 9(Suppl 1):S25.
4. Yue, F. and Tang, J., "A Space-Effecient Algorithm for Three Sequence Alignment and Ancestor Inference", Intl' Journal of Data Mining and Bioinformatics, to appear.
5. Yue, F. and Tang, J., "A New Approach for Tree Alignment Based on Local Re-Optimization", The 2008 International Conference on BioMedical Engineering and Informatics (BMEI2008), accepted
6. Yue, F., Zhang, M., and Tang, J., "A Heuristic for Phylogenetic Reconstruction Using Transposition, Proc. 7th IEEE Conf. on Bioinformatics and Bioengineering (BIBE 2007), 802-808. pdf
7. Yue, F. and Tang, J., "A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference with Affine Gap Costs", Proc. The IEEE International Conf. on Bioinformatics and Biomedicine (BIBM 2007), 143-150, pdf.
8. Yue, F. and Tang, J., "Three Sequence Alignment and Ancestor Inference with Affine Gap Costs", The 2007 International Conference on Bioinformatics and Computational Biology (BIOCOMP'07), 731-737.
9. Cui, L., Yue, F., dePamphilis, C., Moret, B.M.E., and Tang, J., "Inferring ancestral chloroplast genomes with inverted repeat," Procedings of the 2006 International Conference on Bioinformatics and Computational Biology (Biocomp'06), pp 75-81, Las Vegas, NV. PS

In Progress

1. Yue, F., Zheng, W.J., and Tang, J., "A Comparative Genomic Approach to Identify Human Transcription Factor DNA-Binding Motifs".
2. Ye, F., Guo, Y., Yue, F., Lawson, A. and Tang, J., "Improving Tree Search in Phylogenetic Reconstruction"